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1

High-Throughput Simulations Reveal Membrane-Mediated Effects of Alcohols on MscL Gating

Melo, Manuel N., Arnarez, Clément, Sikkema, Hendrik, Kumar, Neeraj, Walko, Martin, Berendsen, Herman J. C., Kocer, Armagan, Marrink, Siewert J., Ingólfsson, Helgi I.

Journal:

Journal of the American Chemical Society

Year:

2017

Language:

english

File:

PDF, 12.13 MB

english, 2017

2

Rationally Designed Chemical Modulators Convert a Bacterial Channel Protein into a pH-Sensory Valve

Armaǧan Koçer, Martin Walko, Erna Bulten, Erik Halza, Ben L. Feringa, Wim Meijberg

Journal:

Angewandte Chemie

Year:

2006

Language:

english

File:

PDF, 290 KB

english, 2006

3

Rationally Designed Chemical Modulators Convert a Bacterial Channel Protein into a pH-Sensory Valve

Armaǧan Koçer, Martin Walko, Erna Bulten, Erik Halza, Ben L. Feringa, Wim Meijberg

Journal:

Angewandte Chemie International Edition

Year:

2006

Language:

english

File:

PDF, 290 KB

english, 2006

4

Synthesis and utilization of reversible and irreversible light-activated nanovalves derived from the channel protein MscL

Koçer, Armağan, Walko, Martin, Feringa, Ben L

Journal:

Nature Protocols

Year:

2007

Language:

english

File:

PDF, 372 KB

english, 2007

5

In vitro synthesis and oligomerization of the mechanosensitive channel of large conductance, MscL, into a functional ion channel

Claire E. Price, Armagan Kocer, Stefan Kol, Jan Pieter van der Berg, Arnold J.M. Driessen

Journal:

Year:

2011

Language:

english

File:

PDF, 529 KB

english, 2011

6

Lamivudine is not effective in the treatment of non-cirrhotic HBeAg (−) chronic hepatitis B patients with low level viremia

Hakan Bozkaya, Cihan Yurdaydin, Mithat Bozdayi, Armagan Kocer Sagiroglu, Ozlem Erkan, Ozden Uzunalimoglu

Journal:

Journal of Hepatology

Year:

2002

Language:

english

File:

PDF, 108 KB

english, 2002

7

Thin phosphatidylcholine films as background surfaces with further possibilities of functionalization for biomedical applications

Lara Tauk, Thierry Thami, Lynda Ferez, Armagan Kocer, Jean-Marc Janot, Philippe Déjardin

Journal:

Colloids and Surfaces B: Biointerfaces

Year:

2013

Language:

english

File:

PDF, 1.01 MB

english, 2013

8

Nanopore sensors: From hybrid to abiotic systems

Armagan Kocer, Lara Tauk, Philippe Déjardin

Journal:

Biosensors and Bioelectronics

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

9

The Molecular Basis for Antimicrobial Activity of Pore-Forming Cyclic Peptides

Cirac, Anna D., Moiset, Gemma, Mika, Jacek T., Koçer, Armagan, Salvador, Pedro, Poolman, Bert, Marrink, Siewert J., Sengupta, Durba

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 1.77 MB

english, 2011

10

Activation of Ms Channel by LPC: A Trigger for MscL Gating in the Absence of Applied Tension

Mukherjee, Nobina, Kocer, Armagan

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 39 KB

english, 2012

11

Bright Ion Channels and Lipid Bilayers

SzymaŃski, Wiktor, Yilmaz, Duygu, Koçer, ArmaĞan, Feringa, Ben L.

Journal:

Accounts of Chemical Research

Year:

2013

Language:

english

File:

PDF, 2.61 MB

english, 2013

12

Studying mechanosensitive ion channels with an automated patch clamp

Barthmes, Maria, Jose, Mac Donald F., Birkner, Jan Peter, Brüggemann, Andrea, Wahl-Schott, Christian, Koçer, Armağan

Journal:

European Biophysics Journal

Year:

2014

Language:

english

File:

PDF, 731 KB

english, 2014

13

Lipid-Bilayer Mediated Control of Mechanosensitive Ion Channels’ Activity

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 54 KB

english, 2013

14

“Multi-Hit” Action of Membrane Active Peptides: Towards Understanding Bacterial Cell Killing

Moiset, Gemma, Cirac, Anna D., Mika, Jacek T., Koçer, Armağan, Stuart, Marc C.A., Sengupta, Durba, Marrink, Siewert-Jan, Poolman, Bert

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 72 KB

english, 2012

15

Phytochemicals Promiscuously Alter Membrane Protein Function and Bilayer Properties

Ingólfsson, Helgi I., Thakur, Pratima, Herold, Karl F., Maretzky, Thorsten, Hall, Katherine, Zwama, Martijn, Yilmaz, Duygu, Hemmings, Hugh C., Blobel, Carl, Koçer, Armağan, Sack, Jon, Andersen, Olaf S

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 41 KB

english, 2013

16

The Molecular Basis for Antimicrobial Activity of Pore-Forming Cyclic Peptides

Moiset, Gemma, Cirac, Anna D., Mika, Jacek T., Koçer, Armagan, Sengupta, Durba, Marrink, Siewert-Jan, Poolman, Bert

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 65 KB

english, 2011

17

Following the Global Structural Changes of an Ion Channel During its Gating by using a Novel Mass Spectrometry Approach

Yilmaz, Duygu, Konijnenberg, Albert, Ingólfsson, Helgi, Dimitrova, Anna, Marrink, Siewert J., Sobott, Frank, Koçer, Armağan

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 44 KB

english, 2014

18

Electrophysiological Characterization of Mechanosensitive Ion Channels in Native Bacterial Membranes

Barthmes, Maria, Donald F. Jose, Mac, Fertig, Niels, Wahl-Schott, Christian, Kocer, Armagan, Bruggemann, Andrea

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 48 KB

english, 2013

19

A Novel Approach to follow Helical Movements of an Ion Channel in Real-Time

Yilmaz, Duygu, Dimitrova, Anna, Walko, Martin, Kocer, Armagan

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 40 KB

english, 2013

20

Membrane Dependence of the Mechanosensitive Channel of Large Conductance

Ingólfsson, Helgi I., Arnarez, Clement, Kumar, Neeraj, Walko, Martin, Berendsen, Herman J.C., Koçer, Armağan, Marrink, Siewert J.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 179 KB

english, 2014

21

Coarse-Grained Molecular Dynamics Simulations Reveal the Membrane Dependence of MscL Gating

Ingolfsson, Helgi I., Jan Marrink, Siewert, Koçer, Armağan

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 75 KB

english, 2013

22

Well-Defined Microapertures for Ion Channel Biosensors

Halža, Erik, Bro, Tobias Hedegaard, Bilenberg, Brian, Koçer, Armağan

Journal:

Analytical Chemistry

Year:

2013

Language:

english

File:

PDF, 319 KB

english, 2013

23

Highly Parallel Transport Recordings on a Membrane-on-Nanopore Chip at Single Molecule Resolution

Urban, Michael, Kleefen, Alexander, Mukherjee, Nobina, Seelheim, Patrick, Windschiegl, Barbara, Vor der Brüggen, Marc, Koçer, Armagan, Tampé, Robert

Journal:

Year:

2014

Language:

english

File:

PDF, 1.91 MB

english, 2014

24

Global structural changes of an ion channel during its gating are followed by ion mobility mass spectrometry

Konijnenberg, Albert, Yilmaz, Duygu, Ingólfsson, Helgi I., Dimitrova, Anna, Marrink, Siewert J., Li, Zhuolun, Vénien-Bryan, Catherine, Sobott, Frank, Koçer, Armağan

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 1.35 MB

english, 2014

25

A Remote Controlled Valve in Liposomes for Triggered Liposomal Release

Koçer, Armağan

Journal:

Journal of Liposome Research

Year:

2007

Language:

english

File:

PDF, 254 KB

english, 2007

26

Image guided drug release from pH-sensitive Ion channel-functionalized stealth liposomes into an in vivo glioblastoma model

Pacheco-Torres, Jesus, Mukherjee, Nobina, Walko, Martin, López-Larrubia, Pilar, Ballesteros, Paloma, Cerdan, Sebastian, Kocer, Armagan

Journal:

Nanomedicine: Nanotechnology, Biology and Medicine

Year:

2015

Language:

english

File:

PDF, 1.05 MB

english, 2015

27

Study of light-induced MscL gating by EPR spectroscopy

Yilmaz, Duygu, Dimitrova, Anna I., Walko, Martin, Kocer, Armagan

Journal:

European Biophysics Journal

Year:

2015

Language:

english

File:

PDF, 1.46 MB

english, 2015

28

Mechanisms of mechanosensing—mechanosensitive channels, function and re-engineering

Journal:

Current Opinion in Chemical Biology

Year:

2015

Language:

english

File:

PDF, 1.56 MB

english, 2015

29

Top-down mass spectrometry of intact membrane protein complexes reveals oligomeric state and sequence information in a single experiment

Konijnenberg, Albert, Bannwarth, Ludovic, Yilmaz, Duygu, Koçer, Armağan, Venien-Bryan, Catherine, Sobott, Frank

Journal:

Protein Science

Year:

2015

Language:

english

File:

PDF, 635 KB

english, 2015

30

Combining Light-Gated and pH-Responsive Nanopore Based on PEG-Spiropyran Functionalization

Ma, Tianji, Walko, Martin, Lepoitevin, Mathilde, Janot, Jean-Marc, Balanzat, Emmanuel, Kocer, Armagan, Balme, Sebastien

Journal:

Advanced Materials Interfaces

Year:

2017

Language:

english

File:

PDF, 2.33 MB

english, 2017

31

Taming Membranes: Functional Immobilization of Biological Membranes in Hydrogels

Kusters, Ilja, Mukherjee, Nobina, de Jong, Menno R., Tans, Sander, Koçer, Armağan, Driessen, Arnold J. M., Egles, Christophe

Journal:

Year:

2011

Language:

english

File:

PDF, 461 KB

english, 2011

32

In situ, Reversible Gating of a Mechanosensitive Ion Channel through Protein-Lipid Interactions

Dimitrova, Anna, Walko, Martin, Hashemi Shabestari, Maryam, Kumar, Pravin, Huber, Martina, Kocer, Armagan

Journal:

Frontiers in Physiology

Year:

2016

Language:

english

File:

PDF, 1.66 MB

english, 2016

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